Publications: Nature

  1. “Smart software untangles gene regulation in cells,” Nature, 609, 428–431, Sept. 5, 2022.
  2. “A graphics toolkit for visualizing genome data,” Nature, 608, 636–637, Aug. 16, 2022.
  3. “Six tips for better spreadsheets,” Nature, 608, 229–230, Aug. 2, 2022.
  4. “Cut the tyranny of copy-and-paste with these coding tools,” Nature, 603, 191–192, Feb. 28, 2022.
  5. H. Else, J.M. Perkel, “The giant plan to track diversity in research journals,” Nature, 602, 566–570, Feb. 23, 2022.
  6. “How to fix your scientific coding errors,” Nature, 602, 172–3, Jan. 31, 2022.
  7. “Terra takes the pain out of ‘omics’ computing in the cloud,” Nature, 601, 154–5, Jan. 4, 2022.
  8. “How remouldable computer hardware is speeding up science,” Nature, 600, 348–9, Dec. 7, 2021.
  9. “Python power-up: new image tool visualizes complex data,” Nature, 600, 347–8, Dec. 6, 2021.
  10. “How to make your research reproducible,” Nature, Oct. 21, 2021.
  11. “Single-cell proteomics takes centre stage,” Nature, 597, 580–2, Sept. 20, 2021.
  12. “Single-cell analysis enters the multiomics age,” Nature, 595, 614–6, Jul. 19, 2021.
  13. “Reactive, reproducible, collaborative: computational notebooks evolve,” Nature, 593,156–7, May 3, 2021.
  14. “Five reasons why researchers should learn to love the command line,” Nature, 590,173–4, Feb. 2, 2021.
  15. “Ten computer codes that transformed science,” Nature, 589, 344–8, Jan. 20, 2021.
  16. C. Woolston, J.M. Perkel, “Sliced, diced and digested: AI-generated science ready in minutes,” Nature, 588, S136–7, Dec. 9, 2020.
  17. “Why scientists are turning to Rust,” Nature, 588, 185–6, Dec. 1, 2020.
  18. J.M. Perkel,  R. van Noorden, “tl;dr: This AI sums up research papers in a sentence,” Nature, Nov. 23, 2020.
  19. “Streamline your writing — and collaborations — with these reference managers,” Nature, 585, 149–50, Sept. 1, 2020.
  20. “Challenge to scientists: Does your ten-year-old code still run?” Nature, 584, 656–8, Aug. 24, 2020.
  21. “Alexa, do science! Voice-activated assistants hit the lab bench,” Nature, 582, 303–4, Jun. 9, 2020.
  22. “The software that powers scientific illustration,” Nature, 582, 137–8, May 8, 2020.
  23. “Synchronized editing: The future of scientific writing,” Nature, 580, 154–5, Mar. 31, 2020.
  24. “Mischief-making bots attacked my scientific survey,” Nature, 579, 461, Mar. 17, 2020.
  25. “The microscope makers putting ever-larger biological samples under the spotlight,” Nature, 575, 715–7, Nov. 26, 2019.
  26. “Make code accessible with these cloud services,” Nature, 575, 247–8, Nov. 5, 2019.
  27. “Workflow systems turn raw data into scientific knowledge,” Nature, 573, 149–50, Sept. 2. 2019.
  28. “Starfish enterprise: Finding RNA patterns in single cells,” Nature, 572, 549–51, Aug. 19, 2019.
  29. “Julia: Come for the syntax, stay for the speed,” Nature, 572, 141–2, July 30, 2019.
  30. “The computational protein designers,” Nature, 571, 585–7, July 23, 2019.
  31. “The new techniques revealing the varied shapes of chromatin,” Nature, 569, 293–4, May 6, 2019.
  32. “A simple approach to dating bones,” Nature, 568, 579, Apr. 23, 2019.
  33. “11 ways to avert a data-storage disaster,” Nature, 568, 131–2, Apr. 1, 2019.
  34. “Pioneering ‘live-code’ article allows scientists to play with each others’ results,” Nature, 567, 17–8, Feb. 28, 2019.
  35. “The race for enzymatic DNA synthesis heats up,” Nature, 566, 565, Feb. 25, 2019.
  36. “Why Jupyter is data scientists’ notebook of choice,” Nature, 563, 145–6, Oct. 30, 2018.
  37. “Web service makes big data available to neuroscientists,” Nature, 563, 143, Oct. 30, 2018.
  38. “Machine learning gets to grips with plankton challenge,” Nature, 561, 567, Sept. 24, 2018.
  39. “A toolkit for data transparency takes shape,” Nature, 559, 513–5, Aug. 20, 2018.
  40. “Software training in Antarctica,” Nature, 559, 515, Aug. 20, 2018.
  41. “The hackers teaching old DNA sequencers new tricks,” Nature, 559, 643–5, July 24, 2018.
  42. “Map-making on a budget,” Nature, 558, 147–8, June 5, 2018.
  43. “Data visualization tools drive interactivity and reproducibility in online publishing,” Nature, 554, 133–4, Jan. 30, 2018
  44. “Plot a course through the genome,” Nature, 549, 117–8, Sept. 5, 2017.
  45. “Cell engineering: How to hack the genome,” Nature, 547, 477–9, July 26, 2017.
  46. “Single-cell sequencing made simple,” Nature, 547, 125–6, July 3, 2017.
  47. “Pocket laboratories,” Nature, 545, 119–21, May 3, 2017.
  48. “Research management: A delicate balance,” Nature, 543, 577–9, Mar. 23, 2017.
  49. “How bioinformatics tools are bringing genetic analysis to the masses,” Nature, 543, 137–8, Mar. 2, 2017.
  50. “The Internet of Things comes to the lab,” Nature, 542, 125–6, Feb. 2, 2017.
  51. “How scientists use Slack,” Nature, 541, 123–4, Jan. 5, 2017.
  52. “Democratic databases: Science on GitHub,” Nature, 538, 127–8, Oct. 6, 2016.
  53. “The paper promoters,” Nature, 536, 113–4, Aug. 4, 2016.
  54. “The struggle with image glut,” Nature, 533, 131–2, May 5, 2016.
  55. “The manuscript-editing marketplace,” Nature, 531, 127–8, Mar. 3, 2016.
  56. “The code librarian,” Nature, 530, 118, Feb. 4, 2016.
  57. “Annotating the scholarly web,” Nature, 528, 153–4, Dec. 3, 2015.
  58. “Eight ways to clean a digital library,” Nature, 527, 123–4, Nov. 5, 2015.
  59. “Biomedical research: Drug hunters wanted,” Nature, 524, 257–8, Aug. 13, 2015.
  60. “Lab-inventory management: Time to take stock,” Nature, 524, 125–6, Aug. 6, 2015.
  61. “The trouble with reference rot,” Nature, 521, 111–2, May 4, 2015.
  62. “Rate that journal,” Nature, 520, 119–120, Apr. 2, 2015.
  63. “Programming: Pick up Python,” Nature, 518, 125–6, Feb. 5, 2015.
  64. “Time management: Seize the moment,” Nature, 517, 517–9, Jan. 22, 2015.
  65. “Molecular biology: Genetic touch ups,” Nature, 514, 395–6, Oct. 16, 2014.
  66. “Scientific writing: The online cooperative,” Nature, 514, 127–8, Oct. 2, 2014.
  67. “How to stay afloat,” Nature, 481, 225–6, Jan. 11, 2012.
  68. “Research and repair,” Nature: 476, 361–3, Aug. 18, 2011.
  69. “The right fit,” Nature, 467, 120, Sept. 2, 2010.
  70. “Cybersecurity: How safe are your data?” Nature, 464, 1260, Apr. 29, 2010.

 
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